SNP Report
Basic Infomation
| Name | rs4809373 dbSNP |
|---|---|
| Location | chr:20,62496661 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2236149 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2236150 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2236151 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2281535 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2281536 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3795149 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3795150 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3795151 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3795152 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4809244 | 0.82[AMR][1000 genomes] |
| rs4809377 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4809378 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6011198 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062327 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6062328 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6062330 | 0.82[AMR][1000 genomes] |
| rs6062551 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6062552 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6062557 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6062559 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6062560 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6062561 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6062562 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6062563 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6062564 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062565 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062566 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6062567 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73151731 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73151741 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73151751 | 0.82[AMR][1000 genomes] |
| rs73151756 | 0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TPD52L2 | Proximal transcriptional regulation |
| ENSG00000268858 | Proximal transcriptional regulation |
| ENSG00000270047 | Proximal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
| KIF5A | Distal transcriptional regulation |
| CHCHD10 | Distal transcriptional regulation |
| MMP11 | Distal transcriptional regulation |
| IFRD1 | Distal transcriptional regulation |
| MCL1 | Distal transcriptional regulation |
| S100A10 | Distal transcriptional regulation |
| VAMP4 | Distal transcriptional regulation |
| SGMS1 | Distal transcriptional regulation |
| ENSG00000255135 | Distal transcriptional regulation |
| C11orf30 | Distal transcriptional regulation |
| UBC | Distal transcriptional regulation |
| SRSF5 | Distal transcriptional regulation |
| SEC11A | Distal transcriptional regulation |
| EIF4A1 | Distal transcriptional regulation |
| ENSG00000264772 | Distal transcriptional regulation |
| MGAT5B | Distal transcriptional regulation |
| DLGAP1-AS2 | Distal transcriptional regulation |
| ZFP36 | Distal transcriptional regulation |
| CASP8 | Distal transcriptional regulation |
| SIAH2 | Distal transcriptional regulation |
| PPDPF | Distal transcriptional regulation |
| ARFRP1 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| ENSG00000229299 | Distal transcriptional regulation |
| ZBTB46 | Distal transcriptional regulation |
| SAMD10 | Distal transcriptional regulation |
| PRPF6 | Distal transcriptional regulation |
| DNAJC5 | Distal transcriptional regulation |
| LINC00659 | Distal transcriptional regulation |
| PTK6 | Distal transcriptional regulation |
| RTEL1 | Distal transcriptional regulation |
| TNFRSF6B | Distal transcriptional regulation |
| CST3 | Distal transcriptional regulation |
| EEF1A2 | Distal transcriptional regulation |
| GMEB2 | Distal transcriptional regulation |
| ENSG00000232442 | Distal transcriptional regulation |
| RTEL1-TNFRSF6B | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| UCKL1 | Distal transcriptional regulation |
| PARD6B | Distal transcriptional regulation |
| HELZ2 | Distal transcriptional regulation |
| STMN3 | Distal transcriptional regulation |
| ZNF512B | Distal transcriptional regulation |
| TCEA2 | Distal transcriptional regulation |
| TPD52L2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014