SNP Report

Basic Infomation

Name	rs6062557 dbSNP
Location	chr:20,62497644
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2236149	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2236150	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2236151	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2281535	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2281536	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3795149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3795150	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3795151	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3795152	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4809373	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4809377	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4809378	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6011198	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6062327	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6062328	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6062551	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6062552	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6062559	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6062560	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6062561	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6062562	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6062563	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6062564	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6062565	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6062566	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6062567	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73151731	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73151741	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000268858	Proximal transcriptional regulation
PPDPF	Distal transcriptional regulation
ARFRP1	Distal transcriptional regulation
ZGPAT	Distal transcriptional regulation
SLC2A4RG	Distal transcriptional regulation
ENSG00000229299	Distal transcriptional regulation
SAMD10	Distal transcriptional regulation
PRPF6	Distal transcriptional regulation
RTEL1	Distal transcriptional regulation
TNFRSF6B	Distal transcriptional regulation
LIME1	Distal transcriptional regulation
DNAJC5	Distal transcriptional regulation
CST3	Distal transcriptional regulation
EEF1A2	Distal transcriptional regulation
GMEB2	Distal transcriptional regulation
ENSG00000232442	Distal transcriptional regulation
ZBTB46	Distal transcriptional regulation
TPD52L2	Distal transcriptional regulation
UCKL1	Distal transcriptional regulation
ENSG00000212195	Distal transcriptional regulation
PTK6	Distal transcriptional regulation
HELZ2	Distal transcriptional regulation
STMN3	Distal transcriptional regulation
ZNF512B	Distal transcriptional regulation
TCEA2	Distal transcriptional regulation
ENSG00000270047	RNA binding protein mediated regulation
TPD52L2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)