SNP Report
Basic Infomation
| Name | rs6062327 dbSNP |
|---|---|
| Location | chr:20,62499309 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2236149 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2236150 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2236151 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2281535 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2281536 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3795149 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3795150 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3795151 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3795152 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4809373 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4809377 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4809378 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6010686 | 0.80[AFR][1000 genomes] |
| rs6011198 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062328 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6062551 | 0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6062552 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6062557 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6062559 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6062560 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6062561 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6062562 | 0.81[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6062563 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6062564 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062565 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062566 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6062567 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73151731 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73151741 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARFRP1 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| LIME1 | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| GMEB2 | Distal transcriptional regulation |
| ENSG00000232442 | Distal transcriptional regulation |
| UCKL1 | Distal transcriptional regulation |
| ENSG00000270047 | RNA binding protein mediated regulation |
| TPD52L2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014