SNP Report

Basic Infomation

Name	rs2588832 dbSNP
Location	chr:14,68602767
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 109)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10129355	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10129612	0.81[JPT][hapmap]
rs10132022	0.94[ASW][hapmap];0.80[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap]
rs10133262	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs10139236	0.83[JPT][hapmap]
rs10139386	0.83[JPT][hapmap]
rs10143455	0.80[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap]
rs10143843	0.80[CHB][hapmap]
rs10144128	0.93[CHD][hapmap]
rs1022979	0.81[AMR][1000 genomes]
rs1080958	0.83[JPT][hapmap]
rs11158710	0.93[CHD][hapmap]
rs11158718	0.84[CEU][hapmap]
rs11158719	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs11158720	0.93[CHD][hapmap]
rs11158721	0.93[CHD][hapmap]
rs11622787	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs11623355	0.80[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap]
rs11623467	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs11624484	0.89[CEU][hapmap]
rs11844529	0.80[CHB][hapmap]
rs11846344	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs11850191	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs11852180	0.80[CHB][hapmap]
rs12437043	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437178	0.80[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap]
rs1467673	0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs1548264	0.83[JPT][hapmap]
rs1548265	0.83[JPT][hapmap]
rs1555944	0.83[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes]
rs17104786	0.93[CHD][hapmap]
rs17104796	0.93[CHD][hapmap]
rs17104800	0.80[CHB][hapmap]
rs17104823	0.93[CHD][hapmap]
rs17104863	0.93[CHD][hapmap]
rs17104889	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs17104908	0.89[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17104917	0.93[CHD][hapmap]
rs1951410	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1952246	0.86[GIH][hapmap]
rs1958112	0.83[ASW][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1958116	0.84[MEX][hapmap];0.82[AMR][1000 genomes]
rs1980654	0.80[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap]
rs1980655	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2208596	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2588809	0.84[MEX][hapmap]
rs2588813	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588821	0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs2588823	0.81[AMR][1000 genomes]
rs2588825	0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs2588826	0.81[EUR][1000 genomes]
rs2588827	0.86[GIH][hapmap]
rs2588828	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588829	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588830	0.89[CEU][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2588831	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2588833	0.89[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588834	0.94[CEU][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs2588835	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2767365	0.89[CEU][hapmap];0.90[GIH][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs2767366	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2767368	0.90[GIH][hapmap];0.81[EUR][1000 genomes]
rs33949561	0.82[AMR][1000 genomes]
rs365934	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs372143	0.89[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs373918	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378408	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401021	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs408156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs411547	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs419450	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs424032	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs431649	0.89[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs435620	0.94[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs437585	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs440627	0.85[EUR][1000 genomes]
rs445921	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs448445	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs4902538	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs4902540	0.80[CHB][hapmap]
rs6573805	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs6573817	0.84[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7141160	0.94[CEU][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs7141450	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs7142112	0.80[CHB][hapmap]
rs7142210	0.80[CHB][hapmap]
rs7146354	0.80[CHB][hapmap]
rs7147522	0.93[CHD][hapmap]
rs7147935	0.93[CHD][hapmap]
rs7148799	0.93[CHD][hapmap]
rs7149343	0.93[CHD][hapmap]
rs7150168	0.83[JPT][hapmap]
rs7151235	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7154646	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs7155097	0.80[CHB][hapmap]
rs7155840	0.80[CHB][hapmap]
rs7156822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7158544	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs7359083	0.93[CHD][hapmap]
rs8007347	0.93[CHD][hapmap]
rs8011527	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8014000	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs8014524	0.85[EUR][1000 genomes]
rs8016525	0.80[CHB][hapmap]
rs8020795	0.80[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap]
rs9323501	0.80[CHB][hapmap]
rs9323502	0.82[AMR][1000 genomes]
rs9672142	0.80[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Distal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)