SNP Report

Basic Infomation

Name	rs1958112 dbSNP
Location	chr:14,68644898
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 70)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022978	0.91[EUR][1000 genomes]
rs1022979	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12437043	0.84[AMR][1000 genomes]
rs1274656	0.80[CEU][hapmap]
rs12894297	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1467673	1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1555944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555945	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17104908	0.84[CEU][hapmap];0.84[GIH][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes]
rs1952245	1.00[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs1952246	0.94[CEU][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs1958111	1.00[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs1958113	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1958115	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs1958116	1.00[CEU][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1980850	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2038979	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2243905	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2254173	0.86[EUR][1000 genomes]
rs2478777	0.93[EUR][1000 genomes]
rs2588806	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2588807	1.00[CEU][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs2588808	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2588809	0.84[MEX][hapmap];0.82[TSI][hapmap]
rs2588813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588814	0.94[CEU][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs2588815	1.00[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs2588816	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2588818	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2588819	0.94[CEU][hapmap];0.90[GIH][hapmap];0.90[EUR][1000 genomes]
rs2588820	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2588821	1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2588823	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2588824	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2588825	1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2588826	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2588827	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs2588828	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2588829	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2588830	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2588831	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588832	0.83[ASW][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588833	0.84[CEU][hapmap];0.84[GIH][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588834	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2588835	0.86[AMR][1000 genomes]
rs2767365	0.80[EUR][1000 genomes]
rs2767366	0.84[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2767367	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2767368	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs2767379	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs2767382	0.90[EUR][1000 genomes]
rs2767383	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2767384	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs365934	0.84[AMR][1000 genomes]
rs372143	0.84[CEU][hapmap];0.81[GIH][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes]
rs373918	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs378408	0.84[AMR][1000 genomes]
rs401021	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs411547	0.84[CEU][hapmap];0.84[AMR][1000 genomes]
rs424032	0.90[AMR][1000 genomes]
rs431649	0.84[CEU][hapmap];0.84[GIH][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes]
rs435620	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs437585	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs448445	0.84[CEU][hapmap]
rs6573817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141160	0.84[CEU][hapmap]
rs7141450	0.82[CEU][hapmap]
rs7156822	0.87[AMR][1000 genomes]
rs8011527	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959039	0.92[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Distal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)