SNP Report

Basic Infomation

Name	rs2588820 dbSNP
Location	chr:14,68628528
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 114)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022978	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022979	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028842	1.00[ASN][1000 genomes]
rs1080321	0.86[ASN][1000 genomes]
rs12432006	0.85[ASN][1000 genomes]
rs1274637	1.00[ASN][1000 genomes]
rs1274638	1.00[ASN][1000 genomes]
rs1274639	1.00[ASN][1000 genomes]
rs1274640	1.00[ASN][1000 genomes]
rs1274641	1.00[ASN][1000 genomes]
rs1274642	1.00[ASN][1000 genomes]
rs1274643	1.00[ASN][1000 genomes]
rs1274644	1.00[ASN][1000 genomes]
rs1274645	1.00[ASN][1000 genomes]
rs1274646	1.00[ASN][1000 genomes]
rs1274647	1.00[ASN][1000 genomes]
rs1274648	1.00[ASN][1000 genomes]
rs1274649	1.00[ASN][1000 genomes]
rs1274650	1.00[ASN][1000 genomes]
rs1274651	1.00[ASN][1000 genomes]
rs1274652	1.00[ASN][1000 genomes]
rs1274653	1.00[ASN][1000 genomes]
rs1274654	1.00[ASN][1000 genomes]
rs1274655	1.00[ASN][1000 genomes]
rs1274656	1.00[ASN][1000 genomes]
rs1274657	1.00[ASN][1000 genomes]
rs1274658	1.00[ASN][1000 genomes]
rs1274659	1.00[ASN][1000 genomes]
rs1274661	1.00[ASN][1000 genomes]
rs12894297	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290939	0.82[ASN][1000 genomes]
rs1295780	1.00[ASN][1000 genomes]
rs1295781	1.00[ASN][1000 genomes]
rs1295782	1.00[ASN][1000 genomes]
rs1296527	1.00[ASN][1000 genomes]
rs1298340	1.00[ASN][1000 genomes]
rs1299581	1.00[ASN][1000 genomes]
rs1314912	0.86[ASN][1000 genomes]
rs1314913	0.86[ASN][1000 genomes]
rs1314914	0.86[ASN][1000 genomes]
rs1314915	0.86[ASN][1000 genomes]
rs1314918	0.86[ASN][1000 genomes]
rs1314919	0.86[ASN][1000 genomes]
rs1315984	0.86[ASN][1000 genomes]
rs1316014	0.86[ASN][1000 genomes]
rs1316118	0.86[ASN][1000 genomes]
rs1316170	0.86[ASN][1000 genomes]
rs1467673	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536455	1.00[ASN][1000 genomes]
rs1555944	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1555945	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744947	1.00[ASN][1000 genomes]
rs1744949	1.00[ASN][1000 genomes]
rs1751381	1.00[ASN][1000 genomes]
rs1751382	1.00[ASN][1000 genomes]
rs1951410	0.87[AMR][1000 genomes]
rs1952245	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952246	0.93[EUR][1000 genomes]
rs1958111	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958112	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1958113	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958115	0.93[EUR][1000 genomes]
rs1958116	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980850	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038979	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243905	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254173	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255767	1.00[ASN][1000 genomes]
rs2478777	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2588806	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588807	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588808	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588809	1.00[ASN][1000 genomes]
rs2588813	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2588814	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588815	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588816	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588818	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588819	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588821	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2588823	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588825	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588827	0.91[EUR][1000 genomes]
rs2588828	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588829	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588830	0.84[EUR][1000 genomes]
rs2588831	0.84[EUR][1000 genomes]
rs2588833	0.81[EUR][1000 genomes]
rs2588834	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767365	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767366	0.82[EUR][1000 genomes]
rs2767367	0.82[EUR][1000 genomes]
rs2767368	0.87[EUR][1000 genomes]
rs2767377	1.00[ASN][1000 genomes]
rs2767378	1.00[ASN][1000 genomes]
rs2767379	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767382	0.92[EUR][1000 genomes]
rs2767383	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767384	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs419450	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs424032	0.80[EUR][1000 genomes]
rs437585	0.81[EUR][1000 genomes]
rs440627	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs445921	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs448445	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6573817	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7141160	0.82[AMR][1000 genomes]
rs7141450	0.86[AMR][1000 genomes]
rs725453	1.00[ASN][1000 genomes]
rs8011527	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8014524	0.86[AMR][1000 genomes]
rs959039	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)