SNP Report

Basic Infomation

Name	rs1952246 dbSNP
Location	chr:14,68631812
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 93)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022978	0.97[EUR][1000 genomes]
rs1022979	0.92[EUR][1000 genomes]
rs11621638	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11628885	1.00[AFR][1000 genomes]
rs1274638	0.83[TSI][hapmap]
rs1274639	1.00[CHB][hapmap]
rs1274640	0.81[CEU][hapmap]
rs1274643	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs1274655	0.81[CEU][hapmap]
rs1274656	0.80[CEU][hapmap]
rs12894297	0.93[EUR][1000 genomes]
rs1298340	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs1314911	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1314913	0.83[TSI][hapmap]
rs1314914	0.81[CEU][hapmap]
rs1314916	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1316118	0.83[TSI][hapmap]
rs1467673	0.94[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs1555944	0.94[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs1555945	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs17104908	0.86[GIH][hapmap];0.80[EUR][1000 genomes]
rs17828120	1.00[ASW][hapmap]
rs1951410	0.83[EUR][1000 genomes]
rs1951631	0.83[TSI][hapmap]
rs1952245	0.94[CEU][hapmap];0.86[GIH][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes]
rs1958111	0.94[CEU][hapmap];0.86[GIH][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes]
rs1958112	0.94[CEU][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs1958113	0.94[CEU][hapmap];0.98[EUR][1000 genomes]
rs1958115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958116	0.94[CEU][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs1980850	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2038979	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2243905	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs2254173	0.92[EUR][1000 genomes]
rs2478777	0.89[EUR][1000 genomes]
rs2588806	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs2588807	0.94[CEU][hapmap];0.83[GIH][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes]
rs2588808	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs2588813	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2588814	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2588815	0.94[CEU][hapmap];0.86[GIH][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes]
rs2588816	0.94[CEU][hapmap];0.98[EUR][1000 genomes]
rs2588818	0.94[CEU][hapmap];0.98[EUR][1000 genomes]
rs2588819	1.00[CEU][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2588820	0.93[EUR][1000 genomes]
rs2588821	0.94[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs2588823	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2588824	0.92[EUR][1000 genomes]
rs2588825	0.94[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs2588826	0.91[EUR][1000 genomes]
rs2588827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588828	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs2588829	0.91[EUR][1000 genomes]
rs2588830	0.88[EUR][1000 genomes]
rs2588832	0.86[GIH][hapmap]
rs2588833	0.86[GIH][hapmap];0.84[EUR][1000 genomes]
rs2588834	0.96[GIH][hapmap];0.86[EUR][1000 genomes]
rs2767365	0.83[CEU][hapmap];0.96[GIH][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes]
rs2767366	0.86[GIH][hapmap]
rs2767368	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767379	0.97[EUR][1000 genomes]
rs2767382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767383	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs2767384	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs34409637	0.83[TSI][hapmap]
rs34558039	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365934	0.80[EUR][1000 genomes]
rs372143	0.90[GIH][hapmap];0.80[EUR][1000 genomes]
rs373918	0.80[EUR][1000 genomes]
rs378408	0.80[EUR][1000 genomes]
rs401021	0.80[EUR][1000 genomes]
rs411547	0.80[EUR][1000 genomes]
rs419450	0.83[EUR][1000 genomes]
rs431649	0.86[GIH][hapmap];0.80[EUR][1000 genomes]
rs435620	0.80[EUR][1000 genomes]
rs437585	0.84[EUR][1000 genomes]
rs440627	0.83[EUR][1000 genomes]
rs445921	0.83[EUR][1000 genomes]
rs448445	0.83[EUR][1000 genomes]
rs6573817	0.94[CEU][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs7141160	0.96[GIH][hapmap];0.83[EUR][1000 genomes]
rs7141450	0.83[EUR][1000 genomes]
rs7150454	1.00[LWK][hapmap]
rs725453	0.81[CEU][hapmap]
rs72725154	1.00[ASN][1000 genomes]
rs72725158	1.00[ASN][1000 genomes]
rs72725160	1.00[ASN][1000 genomes]
rs72725163	1.00[ASN][1000 genomes]
rs72725173	1.00[ASN][1000 genomes]
rs8009813	1.00[CHB][hapmap]
rs8011527	0.90[EUR][1000 genomes]
rs8014524	0.83[EUR][1000 genomes]
rs959039	0.98[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Distal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)