SNP Report

Basic Infomation

Name	rs435620 dbSNP
Location	chr:14,68587803
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 122)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1022978	0.81[EUR][1000 genomes]
rs1080958	0.84[CEU][hapmap]
rs11158718	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs11624484	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs11629073	0.81[EUR][1000 genomes]
rs12436203	0.83[EUR][1000 genomes]
rs12437043	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1274637	1.00[CHB][hapmap]
rs1274638	1.00[CHB][hapmap]
rs1274639	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1274640	1.00[CHB][hapmap]
rs1274643	1.00[CHB][hapmap]
rs1274645	1.00[CHB][hapmap]
rs1274646	1.00[CHB][hapmap]
rs1274650	1.00[CHB][hapmap]
rs1274651	1.00[CHB][hapmap]
rs1274652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1274655	1.00[CHB][hapmap]
rs1274656	1.00[CHB][hapmap]
rs1274657	1.00[CHB][hapmap]
rs1274658	1.00[CHB][hapmap]
rs1274659	1.00[CHB][hapmap]
rs1290939	1.00[CHB][hapmap]
rs1295780	1.00[CHB][hapmap]
rs1295782	1.00[CHB][hapmap]
rs1296527	1.00[CHB][hapmap]
rs1298340	1.00[CHB][hapmap]
rs1314912	1.00[CHB][hapmap]
rs1314913	1.00[CHB][hapmap]
rs1314914	1.00[CHB][hapmap]
rs1314915	1.00[CHB][hapmap]
rs1314918	1.00[CHB][hapmap]
rs1315984	1.00[CHB][hapmap]
rs1316014	1.00[CHB][hapmap]
rs1316118	1.00[CHB][hapmap]
rs1316170	1.00[CHB][hapmap]
rs1467673	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1548264	0.80[AMR][1000 genomes]
rs1555944	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs1555945	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17104908	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1744947	1.00[CHB][hapmap]
rs1744949	1.00[CHB][hapmap]
rs1744959	1.00[CHB][hapmap]
rs1751381	1.00[CHB][hapmap]
rs1751382	1.00[CHB][hapmap]
rs1951410	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1951631	1.00[CHB][hapmap]
rs1952245	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1952246	0.80[EUR][1000 genomes]
rs1958111	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1958112	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs1958113	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1958115	0.80[EUR][1000 genomes]
rs1958116	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1980850	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2038979	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2243905	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2255767	1.00[CHB][hapmap]
rs2588806	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2588807	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2588808	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2588809	1.00[CHB][hapmap]
rs2588813	0.83[CEU][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2588814	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2588815	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2588816	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2588818	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2588819	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2588821	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2588823	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2588825	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2588827	0.82[EUR][1000 genomes]
rs2588828	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2588830	0.94[CEU][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2588831	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2588832	0.94[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588833	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs2588835	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2767365	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2767366	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2767367	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2767368	0.86[EUR][1000 genomes]
rs2767377	1.00[CHB][hapmap]
rs2767378	1.00[CHB][hapmap]
rs2767379	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2767383	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2767384	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs34409637	1.00[CHB][hapmap]
rs34558039	0.81[EUR][1000 genomes]
rs365934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372143	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373918	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401021	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408156	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs411547	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs419450	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs424032	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs431649	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs437585	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440627	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs445921	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs448445	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6573817	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs67566613	0.80[AMR][1000 genomes]
rs7141160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs7141450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7145044	0.81[CEU][hapmap]
rs7151235	0.80[CEU][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7155764	1.00[CHB][hapmap]
rs7156822	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs725453	1.00[CHB][hapmap]
rs72725183	0.83[EUR][1000 genomes]
rs72725185	0.85[EUR][1000 genomes]
rs72725186	0.86[EUR][1000 genomes]
rs72725187	0.85[EUR][1000 genomes]
rs72725188	0.85[EUR][1000 genomes]
rs8011527	0.81[AMR][1000 genomes]
rs8014524	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs959039	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)