SNP Report

Basic Infomation

Name	rs408156 dbSNP
Location	chr:14,68581256
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 72)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10129355	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10129612	0.82[JPT][hapmap]
rs10132022	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10133262	0.80[CHB][hapmap]
rs10136129	0.80[CHB][hapmap]
rs10136790	0.80[CHB][hapmap]
rs10139236	0.84[JPT][hapmap]
rs10139386	0.84[JPT][hapmap]
rs10143455	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10143843	0.80[CHB][hapmap]
rs1080958	0.84[JPT][hapmap]
rs11158719	0.83[JPT][hapmap]
rs11622787	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs11623355	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs11623467	0.83[JPT][hapmap]
rs11844529	0.80[CHB][hapmap]
rs11846344	0.80[CHB][hapmap]
rs11850191	0.80[CHB][hapmap]
rs11852180	0.80[CHB][hapmap]
rs12431697	0.80[CHB][hapmap]
rs12437043	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12437178	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs13329056	0.80[CHB][hapmap]
rs1548264	0.84[JPT][hapmap]
rs1548265	0.83[JPT][hapmap]
rs17104776	0.80[CHB][hapmap]
rs17104800	0.80[CHB][hapmap]
rs17104889	0.83[JPT][hapmap]
rs17104908	0.83[ASW][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1980654	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs1980655	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2208596	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2588813	0.87[YRI][hapmap]
rs2588830	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2588831	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2588832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2588833	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2588835	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2767366	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2767367	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2877369	0.80[CHB][hapmap]
rs365934	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs372143	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs373918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs378408	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs401021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs411547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs424032	0.83[AMR][1000 genomes]
rs431649	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs435620	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs437585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4902535	0.80[CHB][hapmap]
rs4902536	0.80[CHB][hapmap]
rs4902538	0.80[CHB][hapmap]
rs4902540	0.80[CHB][hapmap]
rs6573805	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs7142112	0.80[CHB][hapmap]
rs7142210	0.80[CHB][hapmap]
rs7146354	0.80[CHB][hapmap]
rs7150168	0.83[JPT][hapmap]
rs7151235	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7154646	0.80[CHB][hapmap]
rs7155097	0.80[CHB][hapmap]
rs7155840	0.80[CHB][hapmap]
rs7156822	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7157185	0.80[CHB][hapmap]
rs7158544	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs8014000	0.83[JPT][hapmap]
rs8016525	0.80[CHB][hapmap]
rs8020795	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs9323501	0.80[CHB][hapmap]
rs9672142	0.80[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)