SNP Report
Basic Infomation
| Name | rs242608 dbSNP |
|---|---|
| Location | chr:20,30672836 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17093827 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs17259459 | 0.95[CEU][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs173355 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2223785 | 1.00[ASN][1000 genomes] |
| rs2297303 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs242599 | 1.00[CEU][hapmap];0.85[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs242600 | 1.00[ASN][1000 genomes] |
| rs242607 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242609 | 1.00[CEU][hapmap];0.92[GIH][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs242610 | 0.81[EUR][1000 genomes] |
| rs34774796 | 1.00[ASN][1000 genomes] |
| rs381619 | 0.90[EUR][1000 genomes] |
| rs442268 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57144947 | 1.00[ASN][1000 genomes] |
| rs6058522 | 1.00[CHB][hapmap] |
| rs6058523 | 0.84[EUR][1000 genomes] |
| rs6061187 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6061195 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs6087809 | 1.00[CHB][hapmap] |
| rs6089171 | 0.90[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs6119758 | 0.87[EUR][1000 genomes] |
| rs62204982 | 1.00[ASN][1000 genomes] |
| rs62204983 | 0.89[ASN][1000 genomes] |
| rs73247031 | 1.00[ASN][1000 genomes] |
| rs73247033 | 1.00[ASN][1000 genomes] |
| rs73248931 | 1.00[ASN][1000 genomes] |
| rs73248938 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HCK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| MAGEA5 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014