SNP Report
Basic Infomation
| Name | rs242600 dbSNP |
|---|---|
| Location | chr:20,30665563 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17093827 | 1.00[ASN][1000 genomes] |
| rs2223785 | 1.00[ASN][1000 genomes] |
| rs2297303 | 1.00[ASN][1000 genomes] |
| rs242605 | 0.92[EUR][1000 genomes] |
| rs242607 | 1.00[ASN][1000 genomes] |
| rs242608 | 1.00[ASN][1000 genomes] |
| rs242610 | 0.98[EUR][1000 genomes] |
| rs242612 | 0.84[EUR][1000 genomes] |
| rs242613 | 0.84[EUR][1000 genomes] |
| rs242614 | 0.96[EUR][1000 genomes] |
| rs242615 | 0.85[EUR][1000 genomes] |
| rs34774796 | 1.00[ASN][1000 genomes] |
| rs442268 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57144947 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6061152 | 0.90[EUR][1000 genomes] |
| rs6061154 | 0.93[EUR][1000 genomes] |
| rs6089170 | 0.84[EUR][1000 genomes] |
| rs6089174 | 0.81[EUR][1000 genomes] |
| rs6121337 | 0.84[EUR][1000 genomes] |
| rs62204982 | 1.00[ASN][1000 genomes] |
| rs62204983 | 0.89[ASN][1000 genomes] |
| rs73247031 | 1.00[ASN][1000 genomes] |
| rs73247033 | 1.00[ASN][1000 genomes] |
| rs73248931 | 1.00[ASN][1000 genomes] |
| rs73248938 | 1.00[ASN][1000 genomes] |
| rs926687 | 0.84[EUR][1000 genomes] |
| rs926688 | 0.84[EUR][1000 genomes] |
| rs980368 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HCK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014