SNP Report
Basic Infomation
| Name | rs6061154 dbSNP |
|---|---|
| Location | chr:20,30662274 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs242599 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs242600 | 0.93[EUR][1000 genomes] |
| rs242605 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs242607 | 0.80[EUR][1000 genomes] |
| rs242609 | 0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs242610 | 0.84[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs242613 | 0.81[EUR][1000 genomes] |
| rs242614 | 0.91[EUR][1000 genomes] |
| rs242615 | 0.82[EUR][1000 genomes] |
| rs381619 | 0.80[AMR][1000 genomes] |
| rs4911541 | 0.82[CEU][hapmap] |
| rs57144947 | 0.94[EUR][1000 genomes] |
| rs6058523 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs6061152 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6089170 | 0.87[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs6119758 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs6121337 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs926687 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs926688 | 0.83[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs980368 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP15 | Distal transcriptional regulation |
| HCK | Distal transcriptional regulation |
| HCK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014