SNP Report
Basic Infomation
| Name | rs242609 dbSNP |
|---|---|
| Location | chr:20,30673424 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17259459 | 0.95[CEU][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs173355 | 0.95[EUR][1000 genomes] |
| rs242599 | 1.00[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs242605 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs242607 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes] |
| rs242608 | 1.00[CEU][hapmap];0.92[GIH][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs381619 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs442268 | 0.87[EUR][1000 genomes] |
| rs6058523 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6061154 | 0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6089171 | 0.90[CEU][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6119758 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HCK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014