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rVarBase
SNP Report
Basic Infomation
Name
rs6089171  
dbSNP
Location
chr:20,30682771
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17259459
0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs173355
0.92[EUR][1000 genomes]
rs242599
0.90[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs242607
0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs242608
0.90[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs242609
0.90[CEU][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs381619
0.84[EUR][1000 genomes]
rs442268
0.84[EUR][1000 genomes]
rs6119758
0.81[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
HCK
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
MAGEA5
SCAN