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rVarBase
SNP Report
Basic Infomation
Name
rs173355  
dbSNP
Location
chr:20,30666137
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17259459
0.98[EUR][1000 genomes]
rs242599
0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs242607
0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs242608
0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs242609
0.95[EUR][1000 genomes]
rs242610
0.80[EUR][1000 genomes]
rs381619
0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs442268
0.92[EUR][1000 genomes]
rs6058523
0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6089171
0.92[EUR][1000 genomes]
rs6119758
0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
HCK
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)