SNP Report
Basic Infomation
| Name | rs242610 dbSNP |
|---|---|
| Location | chr:20,30673692 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs173355 | 0.80[EUR][1000 genomes] |
| rs242600 | 0.98[EUR][1000 genomes] |
| rs242605 | 0.93[EUR][1000 genomes] |
| rs242608 | 0.81[EUR][1000 genomes] |
| rs242612 | 0.85[EUR][1000 genomes] |
| rs242613 | 0.86[EUR][1000 genomes] |
| rs242614 | 0.93[EUR][1000 genomes] |
| rs242615 | 0.87[EUR][1000 genomes] |
| rs57144947 | 0.97[EUR][1000 genomes] |
| rs6061152 | 0.91[EUR][1000 genomes] |
| rs6061154 | 0.84[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs6089170 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs6089174 | 0.80[EUR][1000 genomes] |
| rs6089175 | 0.81[EUR][1000 genomes] |
| rs6121337 | 0.86[EUR][1000 genomes] |
| rs6121338 | 0.80[EUR][1000 genomes] |
| rs926687 | 0.86[EUR][1000 genomes] |
| rs926688 | 0.86[EUR][1000 genomes] |
| rs980368 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HCK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014