SNP Report
Basic Infomation
| Name | rs16951001 dbSNP |
|---|---|
| Location | chr:15,67854241 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11632776 | 0.80[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs11635495 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs11637445 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11638507 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11856740 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13379682 | 1.00[ASN][1000 genomes] |
| rs17241403 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17241808 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap] |
| rs1878699 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs2166185 | 1.00[ASN][1000 genomes] |
| rs28730809 | 1.00[ASN][1000 genomes] |
| rs4483801 | 0.82[AFR][1000 genomes] |
| rs55986190 | 1.00[ASN][1000 genomes] |
| rs56038097 | 1.00[ASN][1000 genomes] |
| rs57030473 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66926990 | 1.00[ASN][1000 genomes] |
| rs7172298 | 0.80[ASW][hapmap];0.94[LWK][hapmap] |
| rs72745452 | 1.00[ASN][1000 genomes] |
| rs72745473 | 1.00[ASN][1000 genomes] |
| rs956129 | 1.00[ASN][1000 genomes] |
| rs9652480 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP2K5 | Proximal transcriptional regulation |
| MAP2K5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014