SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11631200	0.83[AFR][1000 genomes]
rs11632776	0.80[ASW][hapmap];1.00[LWK][hapmap]
rs11637445	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11638507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856740	1.00[ASN][1000 genomes]
rs11856999	1.00[CHD][hapmap]
rs13379682	1.00[ASN][1000 genomes]
rs16951001	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17241403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17241808	1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28730809	1.00[ASN][1000 genomes]
rs35733169	0.80[AFR][1000 genomes]
rs55986190	1.00[ASN][1000 genomes]
rs56038097	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57030473	1.00[ASN][1000 genomes]
rs66926990	1.00[ASN][1000 genomes]
rs7172298	0.80[ASW][hapmap];0.94[LWK][hapmap]
rs72745473	1.00[ASN][1000 genomes]
rs72751453	1.00[ASN][1000 genomes]
rs9652480	1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAP2K5	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 4)