SNP Report
Basic Infomation
| Name | rs56038097 dbSNP |
|---|---|
| Location | chr:15,67904569 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11631200 | 0.87[AFR][1000 genomes] |
| rs11637445 | 1.00[ASN][1000 genomes] |
| rs11638507 | 1.00[ASN][1000 genomes] |
| rs11856740 | 1.00[ASN][1000 genomes] |
| rs13379682 | 1.00[ASN][1000 genomes] |
| rs16951001 | 1.00[ASN][1000 genomes] |
| rs17241403 | 1.00[ASN][1000 genomes] |
| rs17241808 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs1878699 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28730809 | 1.00[ASN][1000 genomes] |
| rs55986190 | 1.00[ASN][1000 genomes] |
| rs57030473 | 1.00[ASN][1000 genomes] |
| rs66926990 | 1.00[ASN][1000 genomes] |
| rs72745473 | 1.00[ASN][1000 genomes] |
| rs72751453 | 1.00[ASN][1000 genomes] |
| rs9652480 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQCH-AS1 | Distal transcriptional regulation |
| C15orf61 | Distal transcriptional regulation |
| MAP2K5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014