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rVarBase
SNP Report
Basic Infomation
Name
rs55986190  
dbSNP
Location
chr:15,67929328
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11637445
0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638507
1.00[ASN][1000 genomes]
rs11856740
1.00[ASN][1000 genomes]
rs13379682
1.00[ASN][1000 genomes]
rs16951001
1.00[ASN][1000 genomes]
rs17241403
1.00[ASN][1000 genomes]
rs1878699
1.00[ASN][1000 genomes]
rs28730809
1.00[ASN][1000 genomes]
rs56038097
1.00[ASN][1000 genomes]
rs57030473
1.00[ASN][1000 genomes]
rs72751453
1.00[ASN][1000 genomes]
rs9652480
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
MAP2K5
Proximal transcriptional regulation
MAP2K5
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)