SNP Report
Basic Infomation
| Name | rs11637445 dbSNP |
|---|---|
| Location | chr:15,67991606 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10518739 | 0.83[ASW][hapmap];0.85[LWK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs11631474 | 0.84[LWK][hapmap] |
| rs11638507 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11854197 | 0.82[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs11856740 | 1.00[ASN][1000 genomes] |
| rs12902804 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs12904982 | 0.83[ASW][hapmap];0.90[LWK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs12905397 | 0.81[ASW][hapmap];0.81[YRI][hapmap] |
| rs12905509 | 0.84[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs12912974 | 0.82[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs16951001 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs17241403 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs17242605 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs17243334 | 0.83[ASW][hapmap];0.85[LWK][hapmap];0.85[AFR][1000 genomes] |
| rs1878699 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs28730809 | 1.00[ASN][1000 genomes] |
| rs3784695 | 0.83[ASW][hapmap];0.84[LWK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs3784706 | 0.81[ASW][hapmap] |
| rs3784716 | 0.83[GIH][hapmap] |
| rs4539549 | 0.82[GIH][hapmap];0.81[MEX][hapmap] |
| rs4776988 | 0.86[GIH][hapmap] |
| rs55986190 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56038097 | 1.00[ASN][1000 genomes] |
| rs57030473 | 1.00[ASN][1000 genomes] |
| rs7183168 | 0.83[GIH][hapmap] |
| rs72751453 | 1.00[ASN][1000 genomes] |
| rs8042567 | 0.83[ASW][hapmap];0.85[LWK][hapmap];0.80[AMR][1000 genomes] |
| rs9302245 | 0.81[AFR][1000 genomes] |
| rs9302246 | 0.83[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs9652480 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP2K5 | Proximal transcriptional regulation |
| MAP2K5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014