SNP Report
Basic Infomation
| Name | rs12905397 dbSNP |
|---|---|
| Location | chr:15,68034150 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10518739 | 0.83[ASW][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11631474 | 0.85[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap] |
| rs11637445 | 0.81[ASW][hapmap];0.81[YRI][hapmap] |
| rs11854197 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12443086 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12592101 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12592315 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12902804 | 0.84[JPT][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12904982 | 0.83[ASW][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12905509 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12912974 | 0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17242605 | 0.82[EUR][1000 genomes] |
| rs17243334 | 0.83[ASW][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs28568344 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3784695 | 0.83[ASW][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3784706 | 1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4261477 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4776971 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs55993790 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8030996 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8042567 | 0.83[ASW][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9302245 | 0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9302246 | 0.84[JPT][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP2K5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014