SNP Report

Basic Infomation

Name	rs17241808 dbSNP
Location	chr:15,67892792
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10468041	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11630854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11631200	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11632574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs11632776	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]
rs11638507	0.82[MEX][hapmap]
rs12594849	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16951001	1.00[ASW][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap]
rs17232873	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17241403	0.82[MEX][hapmap]
rs17300363	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1878699	1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28730805	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2899724	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs35733169	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56038097	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7162320	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7170299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7172298	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs737226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8026627	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
MAP2K5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
KIF7	SCAN
LOC145853	Pritchard
MAP2K5	SCAN
MAP2K5	SCAN