SNP Report
Basic Infomation
| Name | rs28730805 dbSNP |
|---|---|
| Location | chr:15,67879418 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11630730 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11630854 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11631200 | 0.80[ASN][1000 genomes] |
| rs11632574 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11632776 | 0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11635495 | 0.85[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17241808 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17300363 | 0.88[ASN][1000 genomes] |
| rs34858114 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs35733169 | 0.84[EUR][1000 genomes] |
| rs4483801 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6494672 | 0.82[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7170299 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7172298 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72747462 | 0.81[EUR][1000 genomes] |
| rs72747464 | 0.81[EUR][1000 genomes] |
| rs737226 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP2K5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014