SNP Report
Basic Infomation
| Name | rs34858114 dbSNP |
|---|---|
| Location | chr:15,67836338 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10468041 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11630730 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11630854 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11632574 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11632776 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11635495 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12912845 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17300363 | 0.91[ASN][1000 genomes] |
| rs28730805 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2899724 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs35597242 | 0.83[ASN][1000 genomes] |
| rs4483801 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6494672 | 0.80[EUR][1000 genomes] |
| rs7162320 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7170299 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7172298 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72747462 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72747464 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs737226 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8026627 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP2K5 | Proximal transcriptional regulation |
| IQCH-AS1 | Distal transcriptional regulation |
| C15orf61 | Distal transcriptional regulation |
| ENSG00000245719 | Distal transcriptional regulation |
| RNU6-1 | Distal transcriptional regulation |
| MAP2K5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014