SNP Report

Basic Infomation

Name	rs7172298 dbSNP
Location	chr:15,67872983
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10468041	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11630730	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11630854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11631200	0.83[ASN][1000 genomes]
rs11632574	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11632776	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11635495	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12594849	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16951001	0.80[ASW][hapmap];0.94[LWK][hapmap]
rs17232873	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17241808	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17300363	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1878699	0.80[ASW][hapmap];0.94[LWK][hapmap]
rs28730805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2899724	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs34858114	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35597242	0.82[ASN][1000 genomes]
rs35733169	0.83[EUR][1000 genomes]
rs4483801	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6494672	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7162320	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7170299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747462	0.80[EUR][1000 genomes]
rs72747464	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs737226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8026627	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
MAP2K5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
MAP2K5	SCAN
MAP2K5	SCAN