SNP Report
Basic Infomation
| Name | rs17232873 dbSNP |
|---|---|
| Location | chr:15,67769907 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10468041 | 1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11630854 | 1.00[JPT][hapmap] |
| rs11632574 | 0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs11632776 | 0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs11635495 | 0.90[ASN][1000 genomes] |
| rs12594849 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12905544 | 0.81[CEU][hapmap];0.90[TSI][hapmap] |
| rs12912845 | 0.93[ASN][1000 genomes] |
| rs17231180 | 1.00[AFR][1000 genomes] |
| rs17241808 | 0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs17299254 | 0.93[EUR][1000 genomes] |
| rs17300363 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2899724 | 0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs34630901 | 1.00[AFR][1000 genomes] |
| rs34983272 | 1.00[AFR][1000 genomes] |
| rs35597242 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs4483801 | 0.80[ASN][1000 genomes] |
| rs71400367 | 1.00[AFR][1000 genomes] |
| rs7162320 | 1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7170299 | 1.00[JPT][hapmap] |
| rs7172298 | 0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs72747462 | 0.85[ASN][1000 genomes] |
| rs72747464 | 0.90[ASN][1000 genomes] |
| rs737226 | 1.00[JPT][hapmap] |
| rs8026627 | 0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs950784 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQCH-AS1 | RNA binding protein mediated regulation |
| IQCH | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014