SNP Report
Basic Infomation
| Name | rs956129 dbSNP |
|---|---|
| Location | chr:15,67629175 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10163156 | 1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1037039 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs1050285 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs11071945 | 0.83[MEX][hapmap];0.83[TSI][hapmap] |
| rs11071949 | 0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs11556090 | 0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs11629568 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs11638476 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11638507 | 1.00[ASN][1000 genomes] |
| rs11856740 | 1.00[ASN][1000 genomes] |
| rs12164949 | 0.83[MEX][hapmap];0.83[TSI][hapmap] |
| rs13313480 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs13379682 | 1.00[ASN][1000 genomes] |
| rs1470003 | 1.00[CHD][hapmap] |
| rs16951001 | 1.00[ASN][1000 genomes] |
| rs17241403 | 1.00[ASN][1000 genomes] |
| rs1822829 | 0.83[MEX][hapmap];0.82[TSI][hapmap] |
| rs1992216 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs2166185 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41357746 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs41370046 | 0.83[MEX][hapmap];0.83[TSI][hapmap] |
| rs4496076 | 0.83[MEX][hapmap];0.83[TSI][hapmap] |
| rs4625676 | 0.83[MEX][hapmap];0.83[TSI][hapmap] |
| rs57030473 | 1.00[ASN][1000 genomes] |
| rs66926990 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7170004 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs7178870 | 0.85[TSI][hapmap] |
| rs72745452 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72745473 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8032868 | 0.88[MEX][hapmap] |
| rs8038883 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
| rs9652480 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQCH | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014