SNP Report
Basic Infomation
| Name | rs41357746 dbSNP |
|---|---|
| Location | chr:15,67663100 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1037039 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap] |
| rs1050285 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap] |
| rs11071945 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap] |
| rs11071949 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap] |
| rs11071951 | 0.81[CEU][hapmap] |
| rs11556090 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap] |
| rs11631885 | 1.00[CEU][hapmap];0.87[YRI][hapmap] |
| rs11633767 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap] |
| rs11852260 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
| rs11855544 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap] |
| rs12164949 | 1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap] |
| rs13313480 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap] |
| rs13379644 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap] |
| rs1444934 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap] |
| rs16950870 | 0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap] |
| rs1822829 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap] |
| rs1992216 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap] |
| rs2044330 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs2120836 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
| rs41370046 | 1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap] |
| rs4301969 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs4496076 | 0.96[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap] |
| rs4625676 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap] |
| rs4776924 | 0.96[CEU][hapmap];0.98[GIH][hapmap];0.94[MEX][hapmap] |
| rs6494636 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap] |
| rs6494638 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs7161888 | 0.86[CHB][hapmap];0.92[JPT][hapmap] |
| rs7170004 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap] |
| rs7171475 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs7178870 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap] |
| rs746978 | 0.96[CEU][hapmap];0.88[CHB][hapmap] |
| rs8027755 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap] |
| rs8032868 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.80[YRI][hapmap] |
| rs8038097 | 0.88[CHB][hapmap];0.96[CHD][hapmap] |
| rs8038739 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap] |
| rs8038883 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap] |
| rs869304 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs869305 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
| rs956129 | 0.83[MEX][hapmap];0.85[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQCH | Proximal transcriptional regulation |
| IQCH | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014