SNP Report
Basic Infomation
| Name | rs6494636 dbSNP |
|---|---|
| Location | chr:15,67476318 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 65)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1037039 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs1050285 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11071945 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11071949 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap] |
| rs11556090 | 0.96[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11631135 | 0.86[AMR][1000 genomes] |
| rs11631885 | 0.96[CEU][hapmap];0.93[JPT][hapmap] |
| rs11633767 | 0.96[CEU][hapmap] |
| rs11636980 | 0.80[EUR][1000 genomes] |
| rs11852260 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs11855544 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11855736 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11856485 | 0.86[ASN][1000 genomes] |
| rs11858541 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12164949 | 0.96[CEU][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap] |
| rs12591763 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12592388 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13313480 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs13379644 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1444934 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs16950870 | 0.88[CHB][hapmap];0.86[CHD][hapmap] |
| rs1822829 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1992216 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2044330 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2120836 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes] |
| rs41357746 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap] |
| rs41370046 | 0.96[CEU][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap] |
| rs4301969 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs4496076 | 0.93[CEU][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap] |
| rs4506839 | 0.80[EUR][1000 genomes] |
| rs4625676 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap] |
| rs4641686 | 0.81[AMR][1000 genomes] |
| rs4776924 | 0.92[CEU][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap] |
| rs55832357 | 0.81[AMR][1000 genomes] |
| rs55841220 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs55885982 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs55894213 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55962710 | 0.80[EUR][1000 genomes] |
| rs58036323 | 0.81[AMR][1000 genomes] |
| rs62014612 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6494638 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7161888 | 0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7165503 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7167097 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7170004 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes] |
| rs7171475 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7172645 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7178870 | 0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap] |
| rs746978 | 0.96[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs8024648 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs8027755 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs8027890 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs8032525 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs8032868 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes] |
| rs8032898 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8037981 | 0.80[EUR][1000 genomes] |
| rs8038097 | 0.88[CHB][hapmap];0.86[CHD][hapmap] |
| rs8038739 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs8038883 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes] |
| rs8040514 | 0.80[EUR][1000 genomes] |
| rs8043518 | 0.80[EUR][1000 genomes] |
| rs8182047 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs869304 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs869305 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs956197 | 0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SMAD3 | Proximal transcriptional regulation |
| SMAD3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014