SNP Report
Basic Infomation
| Name | rs11071951 dbSNP |
|---|---|
| Location | chr:15,67694766 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1037039 | 0.81[CEU][hapmap] |
| rs10468041 | 0.88[YRI][hapmap] |
| rs11071945 | 0.81[CEU][hapmap] |
| rs11071949 | 0.81[CEU][hapmap] |
| rs11071952 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11631885 | 0.81[CEU][hapmap] |
| rs11633767 | 0.81[CEU][hapmap] |
| rs11852260 | 0.81[CEU][hapmap] |
| rs11855544 | 0.80[CEU][hapmap] |
| rs12164949 | 0.81[CEU][hapmap] |
| rs12594849 | 0.87[YRI][hapmap] |
| rs13313480 | 0.81[CEU][hapmap] |
| rs13379644 | 0.81[CEU][hapmap] |
| rs1444934 | 0.81[CEU][hapmap] |
| rs17298032 | 0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1822829 | 0.81[CEU][hapmap] |
| rs1992216 | 0.81[CEU][hapmap] |
| rs2044330 | 0.81[CEU][hapmap] |
| rs2120836 | 0.81[CEU][hapmap] |
| rs2899724 | 0.87[ASW][hapmap];0.95[LWK][hapmap];0.88[YRI][hapmap] |
| rs41357746 | 0.81[CEU][hapmap] |
| rs41370046 | 0.81[CEU][hapmap] |
| rs4301969 | 0.81[CEU][hapmap] |
| rs4625676 | 0.81[CEU][hapmap] |
| rs4776924 | 0.81[ASW][hapmap];0.85[CEU][hapmap] |
| rs55854539 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56108040 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs62016025 | 0.99[ASN][1000 genomes] |
| rs62016030 | 0.87[ASN][1000 genomes] |
| rs6494638 | 0.81[CEU][hapmap] |
| rs6494654 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs7162320 | 0.84[YRI][hapmap] |
| rs7170004 | 0.81[CEU][hapmap] |
| rs7171475 | 0.81[CEU][hapmap] |
| rs7178870 | 0.81[CEU][hapmap] |
| rs7359257 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8026196 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8026627 | 0.87[ASW][hapmap];0.92[LWK][hapmap];0.84[YRI][hapmap] |
| rs8027755 | 0.81[CEU][hapmap] |
| rs8032868 | 0.81[CEU][hapmap] |
| rs8038739 | 0.81[CEU][hapmap] |
| rs8038883 | 0.81[CEU][hapmap] |
| rs869304 | 0.81[CEU][hapmap] |
| rs869305 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQCH | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014