SNP Report
Basic Infomation
| Name | rs1420089 dbSNP |
|---|---|
| Location | chr:2,102938389 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11465722 | 0.92[CEU][hapmap];1.00[MEX][hapmap] |
| rs11903354 | 1.00[GIH][hapmap] |
| rs12053526 | 1.00[GIH][hapmap] |
| rs12105808 | 1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes] |
| rs13425475 | 0.91[CEU][hapmap] |
| rs17696376 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1997503 | 1.00[GIH][hapmap] |
| rs3171845 | 1.00[GIH][hapmap] |
| rs3917289 | 1.00[GIH][hapmap] |
| rs3917329 | 1.00[GIH][hapmap] |
| rs4851561 | 1.00[GIH][hapmap] |
| rs4851567 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes] |
| rs4851581 | 0.92[CEU][hapmap];1.00[MEX][hapmap] |
| rs62151701 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62151719 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62152661 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62152662 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62152663 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6543156 | 1.00[GIH][hapmap] |
| rs917998 | 0.92[CEU][hapmap];1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| MGAT4A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014