SNP Report
Basic Infomation
| Name | rs917998 dbSNP |
|---|---|
| Location | chr:2,103068156 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11465613 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11465620 | 0.82[EUR][1000 genomes] |
| rs11465722 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12105808 | 0.92[CEU][hapmap] |
| rs13425475 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1420089 | 0.92[CEU][hapmap];1.00[MEX][hapmap] |
| rs1420095 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17027056 | 1.00[ASW][hapmap] |
| rs17696376 | 0.92[CEU][hapmap];0.82[YRI][hapmap] |
| rs4851567 | 0.92[CEU][hapmap] |
| rs4851581 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs56030066 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62152711 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62152714 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62154970 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62154971 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62154973 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62154974 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6724826 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6752804 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18RAP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014