SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11465613	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11465620	0.85[EUR][1000 genomes]
rs11465722	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12105808	0.92[CEU][hapmap]
rs13425475	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1420089	0.92[CEU][hapmap];1.00[MEX][hapmap]
rs1420095	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17696376	0.92[CEU][hapmap]
rs4851567	0.92[CEU][hapmap]
rs56030066	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62152711	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62152714	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62154970	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62154971	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62154973	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62154974	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6724826	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6752804	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs917998	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL18RAP	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
IL18R1	SCAN
C2orf49	SCAN