SNP Report
Basic Infomation
| Name | rs13425475 dbSNP |
|---|---|
| Location | chr:2,103025181 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10177815 | 0.84[AFR][1000 genomes] |
| rs11465613 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11465620 | 0.88[EUR][1000 genomes] |
| rs11465655 | 0.86[AFR][1000 genomes] |
| rs11465687 | 0.83[AFR][1000 genomes] |
| rs11465722 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12105808 | 0.91[CEU][hapmap] |
| rs13392126 | 0.86[AFR][1000 genomes] |
| rs1420089 | 0.91[CEU][hapmap] |
| rs1420095 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17696376 | 0.91[CEU][hapmap] |
| rs4851567 | 0.91[CEU][hapmap] |
| rs4851581 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56030066 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62152711 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62152714 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62154970 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62154971 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62154973 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62154974 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6724826 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6752804 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs917998 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000236785 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014