SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11903354	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs1420089	1.00[GIH][hapmap]
rs1997503	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs2228139	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3171845	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917299	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3917329	0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4851551	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4851552	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4851553	0.81[EUR][1000 genomes]
rs4851561	1.00[GIH][hapmap];0.94[TSI][hapmap]
rs7571371	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
IL1R2	Distal transcriptional regulation
IL1R1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)