SNP Report
Basic Infomation
| Name | rs3917329 dbSNP |
|---|---|
| Location | chr:2,102795863 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11903354 | 1.00[GIH][hapmap];0.83[TSI][hapmap] |
| rs1420089 | 1.00[GIH][hapmap] |
| rs1997503 | 1.00[GIH][hapmap];0.88[TSI][hapmap] |
| rs2228139 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3171845 | 0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34722443 | 0.82[EUR][1000 genomes] |
| rs35918372 | 0.82[EUR][1000 genomes] |
| rs3917249 | 0.90[MKK][hapmap] |
| rs3917289 | 0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3917299 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4851551 | 1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4851552 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4851553 | 0.88[EUR][1000 genomes] |
| rs4851561 | 1.00[GIH][hapmap];0.94[TSI][hapmap] |
| rs62151687 | 0.80[EUR][1000 genomes] |
| rs62156407 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1R1 | Proximal transcriptional regulation |
| ENSG00000226925 | RNA binding protein mediated regulation |
| IL1R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014