SNP Report
Basic Infomation
| Name | rs62156407 dbSNP |
|---|---|
| Location | chr:2,102824622 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11887842 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11903354 | 0.83[EUR][1000 genomes] |
| rs17026757 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1997503 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2228139 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs34722443 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35918372 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35952417 | 0.83[EUR][1000 genomes] |
| rs3917299 | 0.82[EUR][1000 genomes] |
| rs3917329 | 0.82[EUR][1000 genomes] |
| rs4851551 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4851552 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4851553 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4851561 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62151687 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1R2 | Distal transcriptional regulation |
| IL1RL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014