SNP Report

Basic Infomation

Name	rs1997503 dbSNP
Location	chr:2,102809235
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11887842	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11903354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996377	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13014004	1.00[ASN][1000 genomes]
rs1420089	1.00[GIH][hapmap]
rs1558648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17026757	1.00[CHB][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17769234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17820338	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3171845	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs34365371	0.96[ASN][1000 genomes]
rs34722443	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35918372	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3815511	0.90[ASN][1000 genomes]
rs3917289	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs3917323	0.89[CHD][hapmap]
rs3917329	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs4851551	0.82[EUR][1000 genomes]
rs4851552	0.82[EUR][1000 genomes]
rs4851553	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4851561	0.88[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs62151687	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62156407	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1RL2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)