SNP Report
Basic Infomation
| Name | rs17820338 dbSNP |
|---|---|
| Location | chr:2,102809182 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11887842 | 1.00[ASN][1000 genomes] |
| rs11903354 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12996377 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs13014004 | 1.00[ASN][1000 genomes] |
| rs1558648 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs17026757 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs17769234 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1997503 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs3218845 | 1.00[YRI][hapmap] |
| rs34365371 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3815511 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3917282 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3917283 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3917306 | 1.00[EUR][1000 genomes] |
| rs3917311 | 1.00[AMR][1000 genomes] |
| rs3917322 | 1.00[EUR][1000 genomes] |
| rs3917323 | 1.00[EUR][1000 genomes] |
| rs3917326 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014