SNP Report

Basic Infomation

Name	rs12422044 dbSNP
Location	chr:11,61786913
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10501388	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736716	0.82[JPT][hapmap]
rs10750964	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792325	0.84[EUR][1000 genomes]
rs10792326	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792327	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10897198	0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10897199	0.82[ASN][1000 genomes]
rs10897206	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10897207	1.00[CEU][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs11230859	0.83[ASN][1000 genomes]
rs11230866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11230871	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11230876	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11230877	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12365622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17156751	0.86[GIH][hapmap]
rs28880656	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3855281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4963445	0.80[JPT][hapmap]
rs6591688	0.87[ASN][1000 genomes]
rs7930404	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7935835	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs7949314	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs907634	0.82[GIH][hapmap]
rs907638	0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
FTH1	Distal transcriptional regulation
ENSG00000269089	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)