SNP Report
Basic Infomation
| Name | rs10897198 dbSNP |
|---|---|
| Location | chr:11,61770899 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10501388 | 0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10792326 | 0.86[CHB][hapmap] |
| rs10792327 | 0.86[CHB][hapmap] |
| rs10897199 | 0.92[ASN][1000 genomes] |
| rs11230859 | 0.95[ASN][1000 genomes] |
| rs11230866 | 0.95[CHB][hapmap];0.89[JPT][hapmap] |
| rs11230871 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12365622 | 0.82[ASN][1000 genomes] |
| rs12422044 | 0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs3855281 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4963279 | 0.83[ASN][1000 genomes] |
| rs4963441 | 0.84[JPT][hapmap] |
| rs4963442 | 0.85[JPT][hapmap] |
| rs4963445 | 0.81[JPT][hapmap] |
| rs7937198 | 0.84[JPT][hapmap] |
| rs7949314 | 0.80[ASN][1000 genomes] |
| rs907638 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| ENSG00000244176 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014