SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 22)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10501388	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10736716	0.84[JPT][hapmap]
rs10792324	0.80[JPT][hapmap]
rs10792326	0.86[CHB][hapmap]
rs10792327	0.86[CHB][hapmap]
rs10897198	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10897199	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11230859	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11230866	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs11230871	0.90[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs12365622	0.81[ASN][1000 genomes]
rs12422044	0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs12575056	0.85[JPT][hapmap]
rs3855281	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4313591	0.93[GIH][hapmap];0.85[JPT][hapmap]
rs4963279	0.84[ASN][1000 genomes]
rs4963441	0.90[JPT][hapmap]
rs4963442	0.93[GIH][hapmap];0.90[JPT][hapmap]
rs4963445	0.85[JPT][hapmap];0.88[AMR][1000 genomes]
rs61899773	0.82[AMR][1000 genomes]
rs7937198	0.93[GIH][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7949314	0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
FTH1	Distal transcriptional regulation
ENSG00000269089	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 5)