SNP Report
Basic Infomation
| Name | rs61899773 dbSNP |
|---|---|
| Location | chr:11,61776862 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10750965 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10792324 | 0.85[ASN][1000 genomes] |
| rs10897199 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs10897200 | 0.83[ASN][1000 genomes] |
| rs11230860 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12421279 | 0.82[ASN][1000 genomes] |
| rs12576538 | 0.91[ASN][1000 genomes] |
| rs12789285 | 0.81[EUR][1000 genomes] |
| rs2089925 | 0.83[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2868723 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4963281 | 0.89[ASN][1000 genomes] |
| rs4963444 | 0.81[ASN][1000 genomes] |
| rs4963445 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7103149 | 0.85[ASN][1000 genomes] |
| rs7107037 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72924251 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7950734 | 0.85[ASN][1000 genomes] |
| rs7950854 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs907638 | 0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| ENSG00000244176 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014