SNP Report
Basic Infomation
| Name | rs12421279 dbSNP |
|---|---|
| Location | chr:11,61777131 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792324 | 0.81[ASN][1000 genomes] |
| rs10897196 | 0.82[EUR][1000 genomes] |
| rs10897200 | 0.99[ASN][1000 genomes] |
| rs10897208 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11230850 | 0.82[EUR][1000 genomes] |
| rs11230860 | 0.81[ASN][1000 genomes] |
| rs11230872 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11230873 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11230874 | 0.85[EUR][1000 genomes] |
| rs12226075 | 0.82[EUR][1000 genomes] |
| rs2089925 | 0.82[ASN][1000 genomes] |
| rs4343027 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4534592 | 0.80[AMR][1000 genomes] |
| rs4963281 | 0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4963444 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4963445 | 0.82[ASN][1000 genomes] |
| rs61899773 | 0.82[ASN][1000 genomes] |
| rs7103149 | 0.80[ASN][1000 genomes] |
| rs72924251 | 0.82[ASN][1000 genomes] |
| rs7950734 | 0.81[ASN][1000 genomes] |
| rs7950854 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| ENSG00000244176 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014