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rVarBase
SNP Report
Basic Infomation
Name
rs12226075  
dbSNP
Location
chr:11,61747883
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10897196
0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10897208
0.89[EUR][1000 genomes]
rs11230850
0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11230872
0.86[EUR][1000 genomes]
rs11230873
0.89[EUR][1000 genomes]
rs11230874
0.89[EUR][1000 genomes]
rs12421279
0.82[EUR][1000 genomes]
rs2028061
0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4343027
0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4534592
0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963444
0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000244176
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)