SNP Report
Name | rs10792326   dbSNP |
---|---|
Location | chr:11,61792714 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10501388 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10750964 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10792325 | 0.86[EUR][1000 genomes] |
rs10792327 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10897198 | 0.86[CHB][hapmap] |
rs10897206 | 0.95[EUR][1000 genomes] |
rs10897207 | 1.00[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
rs11230866 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11230871 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11230876 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11230877 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12365622 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12422044 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17156751 | 0.80[GIH][hapmap] |
rs28880656 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs3855281 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7930404 | 0.95[EUR][1000 genomes] |
rs7935835 | 0.96[CEU][hapmap] |
rs7949314 | 0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs907638 | 0.86[CHB][hapmap] |
Symbol | Regulation type |
---|---|
HIST1H2BG | Distal transcriptional regulation |
HIST1H2AE | Distal transcriptional regulation |
FTH1 | Distal transcriptional regulation |
ENSG00000269089 | Distal transcriptional regulation |
RAB3IL1 | Distal transcriptional regulation |
ENSG00000244176 | Distal transcriptional regulation |
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL related gene | Source |
---|---|
SIRT3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014