SNP Report
Basic Infomation
| Name | rs28880656 dbSNP |
|---|---|
| Location | chr:11,61784128 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10501388 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10750964 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10792326 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10792327 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10897206 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11230866 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11230871 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11230876 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11230877 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12365622 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12422044 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3855281 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6591688 | 0.83[ASN][1000 genomes] |
| rs7930404 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7949314 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000244176 | Proximal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014