SNP Report
Basic Infomation
| Name | rs7930404 dbSNP |
|---|---|
| Location | chr:11,61782322 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10501388 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10750964 | 0.94[EUR][1000 genomes] |
| rs10792325 | 0.82[EUR][1000 genomes] |
| rs10792326 | 0.95[EUR][1000 genomes] |
| rs10792327 | 0.93[EUR][1000 genomes] |
| rs10897206 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10897207 | 0.81[EUR][1000 genomes] |
| rs11230866 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11230871 | 0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11230876 | 0.90[EUR][1000 genomes] |
| rs11230877 | 0.88[EUR][1000 genomes] |
| rs12365622 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12422044 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28880656 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3855281 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7949314 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000244176 | Proximal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| ENSG00000244176 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014