SNP Report
Basic Infomation
| Name | rs10897207 dbSNP |
|---|---|
| Location | chr:11,61789317 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10501388 | 1.00[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs10750964 | 0.82[EUR][1000 genomes] |
| rs10792326 | 1.00[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs10792327 | 1.00[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs10897206 | 0.82[EUR][1000 genomes] |
| rs11230866 | 1.00[CEU][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs11230871 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs12365622 | 0.84[EUR][1000 genomes] |
| rs12417294 | 0.80[ASN][1000 genomes] |
| rs12422044 | 1.00[CEU][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs12577068 | 0.97[ASN][1000 genomes] |
| rs3855281 | 1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs522090 | 0.92[JPT][hapmap] |
| rs7930404 | 0.81[EUR][1000 genomes] |
| rs7935835 | 0.90[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014